"Probably something to do with whatever happened with CERES." To be honest, he only halfway heard that message. He was asleep when it started, trying to go back to sleep when it finished, and then being dumped out of his bed about as soon as he succeeded. But there was definitely some message and what he got out of it sounded like Eiji had been right about the sabotage theories from before.
Now that there isn't something threatening them every five seconds, Ankh finally starts to relax a little bit, and only now does he remember the day before. When he'd fallen asleep, Eiji was still pretty mad at him about the Yummy. Whether it's been forgiven or just forgotten in all the craziness isn't entirely clear, but he's glad that at least isn't an issue right now, either way.
Re: Phase I
Now that there isn't something threatening them every five seconds, Ankh finally starts to relax a little bit, and only now does he remember the day before. When he'd fallen asleep, Eiji was still pretty mad at him about the Yummy. Whether it's been forgiven or just forgotten in all the craziness isn't entirely clear, but he's glad that at least isn't an issue right now, either way.